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ok, confirmed.
Daoscat.nsf does not compact on a server where DAOS is enabled.
So thank you for submitting this idea!
As of now updating the ODS for this NSF does to e.g. ODS 55 has no advantage over a daoscat.nsf with an ODS 51. We will however have to take this into account for future versions.
offline compact does not work for the daoscat.nsf, since compact opens the DaosMgr and opens daoscat.nsf.
The only way I found was stopping Domino, copy daoscat.nsf to another file say daoscat2.nsf, offline compact daoscat2.nsf, and then switch the files around (i.e. rename daoscat.nsf to daoscatold.nsf, and rename daoscat2.nsf to daoscat.nsf), and only then starting Domino.
But this feels gnarly and unsafe, by being non-automated and thus error-prone.
So please consider adding a special case for the daoscat.nsf file to solve this in an automated and supported manner.
Did you try compacting the database while the server is down ?
Interesting observation
With upgrading, i mean upgrading ODS :-)